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Sequencing Portfolio
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Data Process
Basal Quality Control with FastQC
Trimmed reads with Trimmomatic
Mapping reads with HISAT2 for RNA-seq
Mapping reads with Bowtie2 for ChIP-seq
File Conversion and Management with SAMtools
Feature counts with htseqCount
File storage with Genozip
Basal setting and troubleshooting
Data Analysis - RNA-seq
Normalization and DEG analysis with edgeR
DEG - Correlation plot
DEG - Visualization
DEG - Gene ontology and KEGG pathway analysis
DEG - Heatmap
Data Analysis - ChIP-seq
Exploring Sequencing Data with deepTools
Efficient Analysis and Visualization with ngs.plot
Peak Detection - MACS
Peak Detection - SICER2
Exploring ChIP-seq Data with ChIPseeker
Motif Enrichment Analysis
CV
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